PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0926s0051.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 288aa    MW: 30927.7 Da    PI: 7.9968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0926s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-20150184135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Cagra.0926s0051.1.p 150 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 184
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-19144196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.929144180IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13147187No hitNo description
Gene3DG3DSA:3.30.50.109.8E-17148184IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.04E-13149181No hitNo description
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
PfamPF003207.0E-18150184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNSNAGSY SMVFSMQNGG VYEQNGEDYH  60
HASSVVDCTL SLGTPSTRLC EEDEKRRRST SSGASSCISN FWDLLHTKNS NSKTAPFGNV  120
PSFSTNKPAR GCSGGGGGSG GGDSLLSRRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK  180
KEERRTTAAS GNTVVGVAPV QPDQYAGYNN YHAATGNNNN NGTPWAHHHS TQRVPCNYPA  240
NEIRFMDDYS GGVGNNGESD GAHGGVPFLS WRLNVADRAS LVHDFTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0867460.0AY086746.1 Arabidopsis thaliana clone 27213 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291611.10.0hypothetical protein CARUB_v10017765mg
SwissprotQ8LC791e-177GAT18_ARATH; GATA transcription factor 18
TrEMBLR0H5I30.0R0H5I3_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0005_19521e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-159GATA family protein